@article{ef-10-1,
  title = {Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak},
  author = {Gire, Stephen K. and Goba, Augustine and Andersen, Kristian G. and Sealfon, Rachel S. G. and Park, Daniel J. and Kanneh, Lansana and Jalloh, Simbirie and Momoh, Mambu and Fullah, Mohamed and Dudas, Gytis and Wohl, Shirlee and Moses, Lina M. and Yozwiak, Nathan L. and Winnicki, Sarah and Matranga, Christian B. and Malboeuf, Christine M. and Qu, James and Gladden, Adrianne D. and Schaffner, Stephen F. and Yang, Xiao and Jiang, Pan-Pan and Nekoui, Mahan and Colubri, Andres and Coomber, Moinya Ruth and Fonnie, Mbalu and Moigboi, Alex and Gbakie, Michael and Kamara, Fatima K. and Tucker, Veronica and Konuwa, Edwin and Saffa, Sidiki and Sellu, Josephine and Jalloh, Abdul Azziz and Kovoma, Alice and Koninga, James and Mustapha, Ibrahim and Kargbo, Kandeh and Foday, Momoh and Yillah, Mohamed and Kanneh, Franklyn and Robert, Willie and Massally, James L. B. and Chapman, Sinéad B. and Bochicchio, James and Murphy, Cheryl and Nusbaum, Chad and Young, Sarah and Birren, Bruce W. and Grant, Donald S. and Scheiffelin, John S. and Lander, Eric S. and Happi, Christian and Gevao, Sahr M. and Gnirke, Andreas and Rambaut, Andrew and Garry, Robert F. and Khan, S. Humarr and Sabeti, Pardis C.},
  journal = {Science},
  year = {2014},
  doi = {10.1126/science.1259657},
  url = {https://doi.org/10.1126/science.1259657}
}

@article{ef-10-2,
  title = {Real-time, portable genome sequencing for Ebola surveillance},
  author = {Quick, Joshua and Loman, Nicholas J. and Duraffour, Sophie and Simpson, Jared T. and Severi, Ettore and Cowley, Lauren and Bore, Joseph Akoi and Koundouno, Raymond and Dudas, Gytis and Mikhail, Amy and Ouédraogo, Nobila and Afrough, Babak and Bah, Amadou and Baum, Jonathan H. J. and Becker-Ziaja, Beate and Boettcher, Jan Peter and Cabeza-Cabrerizo, Mar and Camino-Sánchez, Álvaro and Carter, Lisa L. and Doerrbecker, Juliane and Enkirch, Theresa and Dorival, Isabel García- and Hetzelt, Nicole and Hinzmann, Julia and Holm, Tobias and Kafetzopoulou, Liana Eleni and Koropogui, Michel and Kosgey, Abigael and Kuisma, Eeva and Logue, Christopher H. and Mazzarelli, Antonio and Meisel, Sarah and Mertens, Marc and Michel, Janine and Ngabo, Didier and Nitzsche, Katja and Pallasch, Elisa and Patrono, Livia Victoria and Portmann, Jasmine and Repits, Johanna Gabriella and Rickett, Natasha Y. and Sachse, Andreas and Singethan, Katrin and Vitoriano, Inês and Yemanaberhan, Rahel L. and Zekeng, Elsa G. and Racine, Trina and Bello, Alexander and Sall, Amadou Alpha and Faye, Ousmane and Faye, Oumar and Magassouba, N’Faly and Williams, Cecelia V. and Amburgey, Victoria and Winona, Linda and Davis, Emily and Gerlach, Jon and Washington, Frank and Monteil, Vanessa and Jourdain, Marine and Bererd, Marion and Camara, Alimou and Somlare, Hermann and Camara, Abdoulaye and Gerard, Marianne and Bado, Guillaume and Baillet, Bernard and Delaune, Déborah and Nebie, Koumpingnin Yacouba and Diarra, Abdoulaye and Savane, Yacouba and Pallawo, Raymond Bernard and Gutierrez, Giovanna Jaramillo and Milhano, Natacha and Roger, Isabelle and Williams, Christopher J. and Yattara, Facinet and Lewandowski, Kuiama and Taylor, James and Rachwal, Phillip and J. Turner, Daniel and Pollakis, Georgios and Hiscox, Julian A. and Matthews, David A. and Shea, Matthew K. O’ and Johnston, Andrew McD. and Wilson, Duncan and Hutley, Emma and Smit, Erasmus and Di Caro, Antonino and Wölfel, Roman and Stoecker, Kilian and Fleischmann, Erna and Gabriel, Martin and Weller, Simon A. and Koivogui, Lamine and Diallo, Boubacar and Keïta, Sakoba and Rambaut, Andrew and Formenty, Pierre and Günther, Stephan and Carroll, Miles W.},
  journal = {Nature},
  year = {2016},
  doi = {10.1038/nature16996},
  url = {https://doi.org/10.1038/nature16996}
}

@article{ef-10-3,
  title = {Genomic infectious disease epidemiology in partially sampled and ongoing outbreaks},
  author = {Didelot, Xavier and Fraser, Christophe and Gardy, Jennifer and Colijn, Caroline},
  journal = {Molecular Biology and Evolution},
  year = {2017},
  doi = {10.1093/molbev/msw275},
  url = {https://doi.org/10.1093/molbev/msw275}
}